rs51219270 SNP Detail

Summary

• ID
  rs51219270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104962052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGTGGG GGGGCCTGTT
  GAGAGGGAAG GGTGGTGATT AGCATAGCAG CAGAGTAAAG CCAGCAACTC CATTGCAGGC
  TTGGAGACAG CATGCAGAGA TGCTACAGTA CAGCCCCCGT GCTTGTGGAA CAATGACCTA
  GAGCACTAAG AGTTTCGCAA AGACAGCATG CTCTGTATTC AGAAAGACAG CCTTGTTGGA
  Y
  AGGGTGTGCA CACCTGTAAA TCCCATCCTG TGGGAGATGG AGGCAGAGGA GAAGCAGGAA
  TTTGAGATCC TTCTTGGCCA CACAGTGTGC TGCAGACCAC CATGGCCAAA GGAGACCTCT
  CAGAATAGGA CACAATGTCC GAAGTGATTT AAAGTCACAG TATTAGGTAT AGGAATAGTA
  CCACGGAGCC TGAAAAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60431117	NES15934364	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51219270					SNP	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431117	NES15934364	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104962052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	1493 bp distal
Cttnbp2nl	CTTNBP2 N-terminal like	1590 bp upstream
Rr367520	regulatory region 367520	1586 bp downstream
Rr582659	regulatory region 582659	1796 bp distal
Rr582660	regulatory region 582660	1100 bp distal
Rr582661	regulatory region 582661	within coordinates
Tssr34915	transcription start site region 34915	1798 bp upstream
Tssr34916	transcription start site region 34916	1749 bp upstream
Tssr34917	transcription start site region 34917	1585 bp upstream
Tssr34918	transcription start site region 34918	140 bp downstream