rs51219000 SNP Detail

Summary

• ID
  rs51219000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129085064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC TGTGGGGAAA TGGGAGGCAT
  R
  TGTATATGTC TTGAGTCACA CGAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147584240	ENSMUSSNP5545006	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320504474	CHEV_2_129068880	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51219000					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129085064 () rs orientation: forward

Symbol	Name	Function Class
Rr373844	regulatory region 373844	91 bp downstream
Rr564887	regulatory region 564887	1213 bp distal
Rr564888	regulatory region 564888	293 bp distal
Rr564889	regulatory region 564889	within coordinates
Rr564890	regulatory region 564890	605 bp proximal
Rr564891	regulatory region 564891	1494 bp proximal
Rr564892	regulatory region 564892	1509 bp proximal