rs51217672 SNP Detail

Summary

• ID
  rs51217672
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127081233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTATATTT CACTCTGGTT
  CTAGTTGCAA TTGAATTTTA AAATGAACAG AAGGAAATCT CATCTTTATG TGGGAGAATT
  GAAAGTTGGA TGCAAATGTT AGATGCACTT CATGTCCTTC TATAGACAAG CTATTCAAGT
  TCCTAAGGAA AGTACCACTG AGGCACATGG GCTCTTCTGT GGCCAACAAA GAGGGCTTTT
  T
  TAGAGTGACA ATGTCAGAAG AGGCCCCACA AGCTCGTTTG TATTCTCAGT GTTGCAGGTT
  CATCTCCATG TTAAGATTTC AGCTAGCTTG CCTTGTACAT GAGTTTCTTA AGAACTTGAA
  GCTTATATGC TCCGAGGCTA AATCTCTAAC AATGCGTCTT AGATTCAGTG ACAAGCATTA
  AATTAAAAGG TGCACTGGGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147524186	ENSMUSSNP3365897	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs51217672					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127081233 () rs orientation: forward

Symbol	Name	Function Class
Ciao1	cytosolic iron-sulfur protein assembly 1	1625 bp downstream
Rr564475	regulatory region 564475	764 bp proximal
Snrnp200	small nuclear ribonucleoprotein 200 (U5)	Intron
Tssr19997	transcription start site region 19997	873 bp downstream