rs51217289 SNP Detail

Summary

• ID
  rs51217289
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90570137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATGGTCA TTTCCACAAG
  AGCCACACAA GAGCAAGCCA GCTGAAATCC CTGAACTGAT AGAGAGGGGT TGCTTTCCAG
  CCTTTTATCT TTACTGAGTA GCTACTGTCA GATGATAGCT TCTCTGGAAG AGAGAATTAT
  TGTGATTTGA GGGCATGGCC ATTGGTAGGT TTCTCACTCT TCACACTCTT ATACATGTGG
  W
  CAGCACTGAT TGGACTTAGT GGGTTATAAA AAAAGGAAGA AAACAACATG AAGTTGAGTG
  GGAGAGGGCT TTTGAGATAA GAGGGAAGTC GGAGGGGCAA AATGGAGAGT GTGCATGATA
  TTTCATTGTA TATGTGTATG AAATTCTCAA AAGTATAATA AAAATGTTAC TCTCTGACAG
  GTTGACCACT CTTTATGGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135478410	ENSMUSSNP6658146	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51217289					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90570137 () rs orientation: forward

Symbol	Name	Function Class
Rr580434	regulatory region 580434	1588 bp proximal