rs51216349 SNP Detail

Summary

• ID
  rs51216349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152495567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGAGTAG CACGCAGCAT
  CAATTTACCC CAGCACACTT TCAGAGGGCA AGGGTGTTTG TTGTGGTGGT TTTTGTTCTT
  GTCTGCTTCT CTTTCACTTT TTGACTTTTC AGAATACAGT TGAAAGAAAA AACTTAAAAC
  GTCTGCTTAT AGCTGTAATC TTCTTCCATG AAGCTGCTCT GTAAGTAAAT CGTGAGTATA
  Y
  ACAGCAAATA ACACATATCC TAAATATATT CTGAGAGTCC CAAAGAGCCG AAGGGAAGTG
  CTTACCTCTC AGTGTGGCAG GACGGATGAG ATATGCTGTC ACTGAACATT TCGGAAGTTG
  TAAATATGCT GTGCGCTTGC TCTCACTGCT GCTTAGGCAC ACACGGGGGG ACAGCCATGG
  TAACTGGTTT CTTCCTCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61101186	NES16612815	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51216349					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61101186	NES16612815	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152495567 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pigk	phosphatidylinositol glycan anchor biosynthesis, class K			Intron
				Noncoding-Transcript-Variant
Rr587606	regulatory region 587606			1970 bp proximal