rs51212977 SNP Detail

Summary

• ID
  rs51212977
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152593346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATGAAAT TCATCAGCAA
  CTCAAACATC AATTTTAAAA TAAAAATATT TTAACTCAAT ACAGTCCAAA GACATATTGA
  TCTAGTACAT GCTGAGAGGT GTGAGTTAGT AAATATTTGT CTTTTTTTTC CCCCCTGATT
  ATGCCATCAT GTGTCTGTAG AAGCAGAAAT TTTTGCATGT TCAGTGAGCT ATCACAGTTC
  A
  TGACATACAG GAGTTTGGAG TTTGAACAGT GTTTGTTGGT GTTATTGGGT AAGGCAAGGT
  AAACAGAGCA AATGCATGTT ATGTATTCAG GACGTCAAGG GTGCAGTGAT GTAGTGGGAC
  ACAGTACAGG AGGGCCTTCA TTATGTATGC ACTTGAACTT TGAATTTATT TCTGGTCTTT
  GCATCTTCAG AAACCTTGTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136104438	ENSMUSSNP5121027	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321029058	CHEV_3_152550673	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51212977					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152593346 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	1035 bp distal
Rr587620	regulatory region 587620	830 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron