rs51209060 SNP Detail

Summary

• ID
  rs51209060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18394678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTAGAG TAGAAGGGAA
  ACAAAGTTAA GGATTAGAAT GGCCTGCTCA ATCTAATAAC TCATCTTACT GCTTTTAAAT
  CATATGATTA CATAACTAAA ATTTATAGAT AGAAAATGAA ATGAAAAAAA ACTTAATAAT
  TTGAGAGTCT CTTTTCCATA ATTTAGCTTA GTTGTTCTGG AGCCTACATG AAGAGGGATC
  Y
  CTAGAGTGAT ATAATCTATG CTTTTAATGA AAATAAAATT AGAAGATTTA GAATGCTCCC
  AAATTCAGGT CTGTTTTAGG AGTTCTTGAT GGTCTGGCTT CCTGATTGAT TTTTGTCTCC
  AAGAATGTTC TCTTGGCACT CACAATAGCA TCAAAGAAAT ACTAACAATA TACTTCTTCC
  CATGAGGATA ATAAAAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60376122	NES15871275	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51209060					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376122	NES15871275	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18394678 () rs orientation: forward

Symbol	Name	Function Class
Gm30667	predicted gene, 30667	1147 bp downstream
Gm65503	predicted gene, 65503	within coordinates
Rr374602	regulatory region 374602	433 bp downstream
Rr573896	regulatory region 573896	910 bp distal