rs51208442 SNP Detail

Summary

• ID
  rs51208442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125101960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATGCATG CCTTGATAGA
  GCTTTTTCTG CAAAATATCT GAGAGTAATG TAGTCAATGG TAGATATCTG TGCCCATATA
  CCTAGTTATA TCTAAATTGT CGGTTATGAA GTAATGTTTT CATGAAATAT ATCGAAAAGT
  GGTATGTATT TAAATGCCTT GGTCCCTAAA ATTGGGTTGA AACAAATAAT AGCTTGCAGA
  Y
  AGTAATTTAA TTCTGATAAA CTGTGCTCTT GCCAAGACTC AGATCCTCTT AGACTCCAGA
  GAAAATGCTG AGACTAGCAG TTATTTGGGT TATTTTTACT TTAATTCCAC TTCTCCCTTT
  GTTTAATGTC ACATAATTCT GACCTTTATT ACCACACTTA TCAACTTGCT CACCTGCTCA
  GCTTCTGTTT CCAGTATATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135806140	ENSMUSSNP245765	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320935453	CHEV_3_125011229	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51208442					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125101960 () rs orientation: forward

Symbol	Name	Function Class
Rr584607	regulatory region 584607	1253 bp distal