rs51203963 SNP Detail

Summary

• ID
  rs51203963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101866250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTTAAA TGCAAATCTT
  TCTTTCAAAA CACAAAAGAA CTCTGCTTGG TATTAAGGAA TACAATCAGA TATAAAAATT
  TTCAGCAGTC ACCAACAGAG ATAATCACTA CCGACAGTCC AGTGTTTTTT TCCCTCTGGC
  TGGCCCCTTA AATTTCTGTT TGCAGAGGGA AGCTCCCAGG ACACATTGTG TAAGCACTGG
  R
  CCTAGCTGTG GAATGGTTAC AAGTGTCCAA ATTATCTCAA CTATCCTATG TCCTTTATAT
  GTGAGTCCTT TGTGGACTGT GACTACACAG AGTTCTTTCT TCTTTCCAGT AGAAATTTAA
  GAGGAAACGA AAGACAGAGA CATGCCATAG ATTACCTAGA ACACTGGCCT TACAGAGACT
  AAAGCCCAAA TGGCAACCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147097732	ENSMUSSNP4030925	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320433809	CHEV_2_101876062	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51203963					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101866250 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr561613	regulatory region 561613	1874 bp distal
Rr561614	regulatory region 561614	1110 bp distal
Rr561615	regulatory region 561615	516 bp proximal
Rr561616	regulatory region 561616	1129 bp proximal