rs51202878 SNP Detail

Summary

• ID
  rs51202878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138961036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCT CTGTGCTGTG CTGGCCCTCA
  R
  GGCGCAGCAT ACGGTCTCAT CATCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147668493	ENSMUSSNP1520417	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321380429	CHEV_4_138789640	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51202878					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138961036 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Capzb	capping actin protein of muscle Z-line subunit beta			Intron
				Noncoding-Transcript-Variant
Rr377281	regulatory region 377281			within coordinates
Rr603157	regulatory region 603157			332 bp distal
Rr603158	regulatory region 603158			705 bp distal
Rr603159	regulatory region 603159			224 bp distal
Rr603160	regulatory region 603160			167 bp proximal
Rr603161	regulatory region 603161			1406 bp proximal
Tssr39913	transcription start site region 39913			322 bp downstream
Tssr39914	transcription start site region 39914			198 bp downstream