rs51202168 SNP Detail

Summary

• ID
  rs51202168
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170835099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGCTCC CGAGCACATC
  TGCACTCATG TGTTTAGACA CATACACACA CATGCACCCA CTCATGCATG TGTTCACAAG
  CACACACAAT TAAAGATGAT AGAAATAAAT ATACATTTAA AAATTTTTTT AAATGACTAA
  TTTGAGCATA GTCTAACTAT GCTTTAATGT GGATAGGCTA GTTATAAGTC AGTCTAAAAG
  W
  TGGTGTCATG GTTTGGAAAG TTCTCATATG GCAACAGGCT GTATTATTTG AATACCCACA
  GGCAAAGTGA ACAAGCTATG ACTTAAGTTC ACACCACTAT GTGTATTTAA ATTTCCTACC
  ATCTTCTTCT CTTACTTCTG TCTGTCTCTT CCTGGTTGTA GGATTTGCTC TCAGCTGGTT
  CCCACGCTGT CTCTAGGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60345108	NES15844795	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51202168					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345108	NES15844795	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170835099 () rs orientation: forward

Symbol	Name	Function Class
Rr423182	regulatory region 423182	866 bp distal
Rr423183	regulatory region 423183	410 bp distal