rs51199219 SNP Detail

Summary

• ID
  rs51199219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137494453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCT TAAAGCTCTG TGCTTGGAAC
  Y
  GTGAGCCAAA ATGAACCCTT CTGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147619239	ENSMUSSNP2480262	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321367254	CHEV_4_137323057	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51199219					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137494453 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Gm63526	predicted gene, 63526			716 bp upstream
Rr602708	regulatory region 602708			727 bp distal
Rr602709	regulatory region 602709			483 bp distal
Rr602710	regulatory region 602710			1686 bp proximal
Tssr44134	transcription start site region 44134			698 bp upstream
Tssr44135	transcription start site region 44135			676 bp upstream
Tssr44136	transcription start site region 44136			641 bp upstream