rs51198783 SNP Detail

Summary

• ID
  rs51198783
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147900171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACT CTGTAGACCA GGCTGGCCTC
  R
  AACTCAGAAA TCAGCCTGCC TCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147983263	ENSMUSSNP5349581	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321414956	CHEV_4_147189823	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51198783					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147900171 () rs orientation: forward

Symbol	Name	Function Class
Rr398848	regulatory region 398848	908 bp downstream
Rr604504	regulatory region 604504	686 bp distal
Rr604505	regulatory region 604505	943 bp distal
Tssr44549	transcription start site region 44549	1039 bp upstream