rs51198659 SNP Detail

Summary

• ID
  rs51198659
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38539954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAT CATGCCTGCT GAAAGACTAC
  C
  ATAAGCTATA ACTGTCATTA ATCTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss134837225	ENSMUSSNP4008601	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51198659					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38539954 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	961 bp upstream
Cpgi13104	CpG island 13104	399 bp distal
Gm65619	predicted gene, 65619	322 bp downstream
Rr397648	regulatory region 397648	755 bp downstream
Rr575675	regulatory region 575675	1559 bp distal
Rr575676	regulatory region 575676	690 bp distal
Rr575677	regulatory region 575677	within coordinates
Tssr28929	transcription start site region 28929	594 bp downstream
Tssr33057	transcription start site region 33057	1014 bp upstream
Tssr33058	transcription start site region 33058	983 bp upstream
Tssr33059	transcription start site region 33059	941 bp upstream