rs51197219 SNP Detail

Summary

• ID
  rs51197219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144922708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAT ATCAAAAGAG ATGAGCCAGT
  Y
  GGGCGTGGTG GCACACGCCT TTAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147848443	ENSMUSSNP5838074	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321412799	CHEV_4_144786041	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51197219					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144922708 () rs orientation: forward

Symbol	Name	Function Class
Rr398672	regulatory region 398672	920 bp downstream
Rr604319	regulatory region 604319	1144 bp distal
Rr604320	regulatory region 604320	1769 bp distal
Rr604321	regulatory region 604321	643 bp distal
Rr604322	regulatory region 604322	1030 bp distal
Rr604323	regulatory region 604323	557 bp proximal
Tssr44481	transcription start site region 44481	1174 bp upstream
Tssr44482	transcription start site region 44482	1145 bp upstream
Tssr44483	transcription start site region 44483	1094 bp upstream
Vps13d	vacuolar protein sorting 13D	1133 bp upstream