rs51196606 SNP Detail

Summary

• ID
  rs51196606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88768281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAGTGAA AGAGGAAGCA
  ATAATGAAAA CCACAATGGT TTAGAAAACA CCCAGACGCA AGCAGAGAAT GAGTTAAAGA
  AAGTGAAAAG ACAAGTGGAA AGTGATGGAA GGGCATTCAG AAAGTAAAAA CCAGTGTTTG
  CCCTATTTAA GACACATTCA CCCAGGATGG TCTTCAGAGA ACCTAGAGGG GAAGGATCAG
  R
  ACCAAACAGT CCAGAAGACC AGAAGCTTTG GCAACACTCA CCATGGCTAG GCTCTGTGCT
  TTCCTGATGG TCCTGGCGGT GCTGAGCTAC TGGCCAACCT GCTCTCTAGG ATGTGACCTT
  CCTCAGACTC ATAACCTCAG GAACAAGAGA GCCTTGACAC TCCTGGTACA AATGAGGAGA
  CTCTCCCCTC TCTCCTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146941427	ENSMUSSNP5936938	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51196606					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88768281 () rs orientation: forward

Symbol	Name	Function Class
Ifna	interferon alpha complex region	573 bp proximal
Ifna1	interferon alpha 1	43 bp upstream
Rr595123	regulatory region 595123	1159 bp proximal