rs51193044 SNP Detail

Summary

• ID
  rs51193044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72357834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAA CAGGCAGTAT TCTGAATACA
  Y
  TGTATGTCAC CGAGTTATAC CCTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133284305	ENSMUSSNP2381508	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321821592	CHEV_6_72330845	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51193044					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72357834 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632156	regulatory region 632156	1245 bp distal
Rr632157	regulatory region 632157	440 bp distal
Rr632158	regulatory region 632158	within coordinates
Rr632159	regulatory region 632159	263 bp distal
Tssr61448	transcription start site region 61448	368 bp upstream
Tssr61449	transcription start site region 61449	829 bp downstream
Tssr61450	transcription start site region 61450	903 bp downstream
Vamp5	vesicle-associated membrane protein 5	383 bp upstream