rs51191452 SNP Detail

Summary

• ID
  rs51191452
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:15639430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTCTT TCTTTCTTTC
  TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT AAAGAAAGCA
  AGTTAGAAAG ACTCAGCTCA GTAGTCAAAA GTGCAATTTG GGTTTTATTG TGCAAAAACC
  K
  AAAGTGGAAA CAGCCCTTCA GAAACTGCTT AACATACATG GAATTCAAAA AGCCCTCTTT
  ACAAGGCCTT CGGTGCACTC ATGCTAGCAC AACCAAGTTC TCTGCCCAAG TTATTCCTTT
  CAAGCTTCAT AGTTTAAGCA CAACATGAAT ACCTCGGCCA CAGGAACTCA GTGAAGCAGC
  AAACACGGGC TCAGTGTCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60865400	NES15989599	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs51191452					SNP	T	T	T	T	T	T	T	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60865400	NES15989599	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15639430 () rs orientation: forward

Symbol	Name	Function Class
Gm36352	predicted gene, 36352	within coordinates
Gm44039	predicted gene, 44039	1062 bp downstream
Rr626670	regulatory region 626670	210 bp distal
Rr626671	regulatory region 626671	within coordinates