rs51182260 SNP Detail

Summary

• ID
  rs51182260
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56548377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTACCCTT CTCTGTTGCT
  AGAAACCCTG CGAGTTAAAG GTGGATATTA CATTTTTAAA TGGTTTGGCA CATTAAAAAA
  GTATAAAGAA CTCAGTTCTC TCTCGATTTT CTCACAGACT CTGTAGCCTG GCTTTAGAGC
  CTTTTCTCTA ACTGAGCTGC CTTGTCTTGG CTCAATGGAG AAAATGCAAC TTCTCCTGCA
  T
  CAACTTGATA TTCTAAGGCT GTCCCCTTCT GTGAGGACAA AAGGGTGAGG GATAGGGGAG
  GGGAGTAGTA CAGACTGGGA GGGGAAGAGG AAAGAGAAAC TGTAATCTGG GTGTAAAGTA
  AATATGTTAA TTAACGAATG AAAAATATAT AAAGAACTCA AAAGTTGGAA GTGGTGGTGT
  ACACCTGTAA TCTCGGCCTT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss133228509	ENSMUSSNP594504	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs51182260					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56548377 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66600	predicted gene, 66600			1999 bp downstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631076	regulatory region 631076			1977 bp distal