rs51181922 SNP Detail

Summary

• ID
  rs51181922
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13151135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATATAGT AAAAATGGTC
  ATCTTACTAA AATTATTGAT GGATAGGCTT GGCATCCCCT TCCCTTCAGG CCTATATGTG
  GAAGCTTTTA TAACTATACA ATCTACAGAT TCAATGCAAT CCCCATCAAA ATTCCAACTC
  AATACTTCAT AGAGTTAGAA AGAGAAATTT GCAAATTCAT TTGGAATAAG AAAAAACCCA
  K
  GATATCGAAA ATTATTCTCA ACGATAAAAG AACTTCTGGG GGAATCATCA TCCCTGACCT
  CAAGCTGTAA TACAGAGGAA TTATTAAAAA TTGTATGGTA TTGGTATAGA GACAGGCAGG
  TAGATCAGTG GAATAGAACT GAAGACGTAG AAATGAACCC ACACACCTAT GGTCACTTGA
  TCTTTGACAA AGGAGCTAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss133003192	ENSMUSSNP6130951	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T		G
ss321747162	CHEV_6_13101136	CHEVERUD	SCREENING_POP	f	SNP				T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51181922					SNP	T	T	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13151135 () rs orientation: forward

Symbol	Name	Function Class
Rr626556	regulatory region 626556	1064 bp proximal
Rr626557	regulatory region 626557	1309 bp proximal