rs51178139 SNP Detail

Summary

• ID
  rs51178139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:71850323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTATGGTAG CATTCTGTAG CCCTCAGAGA CTCCTGTGCG
  TAAGGGGCTC GTGCCCATCT TCTGTCTTCC TAGTAACCAT TGTCTTTACA AACTCTTAAG
  R
  CAGGATCCTG GCTTCCACTA TCCCCCCTTC ATCTAACCAC TCGGGAACCA TGGAGGTGGC
  AGAGGCGAAC AGCCCCACGG AGGAGGAGGA AGAGGAGGAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss60631380	NES16279463	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs51178139					SNP	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60631380	NES16279463	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71850323 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2310041K03Rik	RIKEN cDNA 2310041K03 gene			904 bp upstream
Babam1	BRISC and BRCA1 A complex member 1			Intron
				mRNA-UTR
				Splice-Site
Cpgi20525	CpG island 20525			530 bp distal
Rr400925	regulatory region 400925			751 bp downstream
Rr665043	regulatory region 665043			1905 bp distal
Rr665044	regulatory region 665044			1650 bp distal
Rr665045	regulatory region 665045			808 bp distal
Tssr77853	transcription start site region 77853			788 bp downstream
Tssr81705	transcription start site region 81705			1858 bp upstream
Tssr81706	transcription start site region 81706			1839 bp upstream
Ushbp1	USH1 protein network component harmonin binding protein 1			1877 bp upstream