rs51175848 SNP Detail

Summary

• ID
  rs51175848
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:129645521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCATGG TGGCTTAGGG
  TGGTAATCCA AGTTACTTGG GAAGCTGAGG CAGTAGTGTC TCAAACTCAA TGACAGCCTT
  GTCTATAGAA ATCTATGTTG GTTCCAGGAA CAAAACTATG CAACATTTGT CCCTAAAACA
  AAAATGTGAA GGAGTAGTCT AGAGTAAATT CCTTGTCTGT CATGCAAATA AAAATACTCA
  B
  AAATAAAAAT AGTCATAAAT AAAAATATCA GTAATAGGAA GCAAGACTTC ACATGAATGT
  TTTTTTGAAT GCCTATAATA TAATTGAGCT GAAAGACTAA TATAGGTATA TTCATTTTAT
  ACTTTTTAAA ATAATGATTT AGGTTATTTT GAAATTTTTG ATGTGTGATA ATGGTCAAGG
  ACTGGATGCT TTGGGGGTGC                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60946614	NES16174329	PERLEGEN	MM_PANEL2	f	SNP	T			T		C		T		T	T	T	T	T
ss60946615	NES16174328	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C	C	C	G			G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51175848					SNP	?	C	C	?	C	C	C	?	G	T	T	?	?	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60946614	NES16174329	PERLEGEN	MM_PANEL	f	SNP	C/T
ss60946615	NES16174328	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129645521 () rs orientation: forward

Symbol	Name	Function Class
Klrc1	killer cell lectin-like receptor subfamily C, member 1	Intron