rs51157802 SNP Detail

Summary

• ID
  rs51157802
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:103484802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCAAGTC GTTTTGTTCT
  CGAATGAAAG GACAAGCGAA GGGAATCCAG GCTCTCTGAG GTTCTGCCGA GTCACTGTTC
  TGGTCTTTGG CTTTGTTAGT TTCTAAACTG AAGGAGGCTG CTTTGTGTTT CCAAGGTTGC
  CTTTGAAGGA TCTTTTCCTC AGAGGAACAT CCTGCCTTCC TTTTATTACA GCAGTTGGCC
  W
  GAAAATCCCA GTTGATCTGT GACTGTTGGG AACTGCTAGA CCGCAAGGCC ATTTCCAACA
  CTACAGCTCT TCCACTAAAC AATTTTTCTA GGAATGATGC CATTATCACT AGCAACTGGC
  TTTGCCAAAA GGCAGTGCTC TTGCAATAGC CCCAGCCCTG GGAATGATAC CAAATGATGC
  TTCAGCCAGA GGGTAGGCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60923553	NES16211959	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51157802					SNP	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60923553	NES16211959	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:103484802 () rs orientation: forward

Symbol	Name	Function Class
Rr635887	regulatory region 635887	within coordinates