rs51157684 SNP Detail

Summary

• ID
  rs51157684
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118127201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACAGCTGG TCAAGAGCAG AGTCTGGAGT TGGGCTCGAC
  CTCCGTCTGT CTCCGGCTCC TGGTTATTCC AAGCTCCGGG AATAACAAAA AAATAAAAAC
  A
  ATACTGGAGA ACTGCTTTCT GGGAAGTGCC CCAGACTCTC CTAGAGCCTT TCCATCTACC
  CTAAGCCTTA GGCAGACCCC GGGACTCCTC CTCTTCCCT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147302752	ENSMUSSNP2376288	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs51157684					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118127201 () rs orientation: forward

Symbol	Name	Function Class
Ptprf	protein tyrosine phosphatase receptor type F	Intron
Rr598358	regulatory region 598358	within coordinates
Rr598359	regulatory region 598359	796 bp proximal
Rr598360	regulatory region 598360	900 bp proximal
Tssr43045	transcription start site region 43045	267 bp upstream