rs51154203 SNP Detail

Summary

• ID
  rs51154203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155966798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCTCCGGT AACCTTAAAT ATTCTGAATG TTACTGAGAA
  AGGAACAAGA ACAGCTGAGA GAGACTAGGC TATAAAAATA ACTAGAATTA AATTATGCTG
  Y
  ATACTGTAAG GATGTGTTGA CAACAGAATG GAAGCCAATG AAAGTTTTGT GGTTGCTGGG
  ATTTGAACTC AGGACTTTTG GAAGAGCAGT CAGTGCTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148119290	ENSMUSSNP3767963	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321443585	CHEV_4_155256450	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51154203					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155966798 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ints11	integrator complex subunit 11			Intron
				Noncoding-Transcript-Variant
Rr606604	regulatory region 606604			891 bp distal
Rr606605	regulatory region 606605			1312 bp proximal