rs51149370 SNP Detail

Summary

• ID
  rs51149370
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89045558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTATAT ATATATATAT
  TTGCATGTGT GTGAGCACAT TTGTGTGCAG GCATGTATTC ACCTGTGTAC AGATATGCAG
  AAGCCTGAAG TTGCTGTCTC ATGTCTTCTT CAGTCATTCT CCATCTCATA TACGGAAGCA
  GGGACTCTCA ATTGATCCCA GAGCTTACTG GTCATCTAGT CTAGCTAGCC AGCTTTGCCC
  C
  CCAGATCTGC TGCCTCTGGC TCCAAGTGCC AGGATTGCAG GTAGCTACCA TATCTGCTCA
  GCTTTTACAC AGATTCTGTT CATCTGAACT CCAGCCCTCA AACTTGCATG GCAAGGGCTT
  TATCCACTGA GTCCTCTTCC TAACCCAGTA CTTTATTTTA AAAACAAGAA TCACCGGTGA
  GCTGAAGGAA ATGTGTCTGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146946514	ENSMUSSNP156116	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs51149370					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89045558 () rs orientation: forward

Symbol	Name	Function Class
Gm12602	predicted gene 12602	within coordinates
Gm68733	predicted gene, 68733	within coordinates
Rr398332	regulatory region 398332	1950 bp upstream
Rr595153	regulatory region 595153	640 bp proximal
Rr595154	regulatory region 595154	871 bp proximal
Rr595155	regulatory region 595155	920 bp proximal
Rr595156	regulatory region 595156	1266 bp proximal
Rr595157	regulatory region 595157	1882 bp proximal
Tssr42402	transcription start site region 42402	765 bp upstream
Tssr42403	transcription start site region 42403	896 bp downstream