rs51149306 SNP Detail

Summary

• ID
  rs51149306
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121996634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTAGATC TTTTATATTC
  CAAATATAAA TGTAATAGGT ATGCAATAGG TATGCAGTGA AGGTTGCTGG TTGGGAGAGC
  TTTGACACTG GATCCTCTGA AGGGGATTCT GTATTCTGGA GGATGGACTC TGCTGAAGCA
  CAGAGTCTGG AGCGGATGGA GCGGTCTGGG CTGCGGGAGC TCCTAGCAGG ACAGAACCTA
  S
  ACTTGTTAAC ACACGTCCAG GGGATGTTTG GGTGCAGGCC ACAGTGCTGT TTACCCTGAA
  ATACCAATTC TACCATGCTA GAGAGCCGAA CCCACTTGGA TTAATGTAGT CTAGGTTCTT
  GCCATCAATG ATTAAATATA CTGATAAATA TTTTGTATTA GCCAATACAA CCAAGCCTGT
  ACGTCCACTT TTTGAAACTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135736979	ENSMUSSNP4990349	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320909562	CHEV_3_121905903	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51149306					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121996634 () rs orientation: forward

Symbol	Name	Function Class
Gm43158	predicted gene 43158	within coordinates
Gm46822	predicted gene, 46822	within coordinates
Rr584257	regulatory region 584257	205 bp distal
Rr584258	regulatory region 584258	639 bp proximal