rs51146053 SNP Detail

Summary

• ID
  rs51146053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141167877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAAGAAA TAGGCAGCCC
  TGGTGTATGG ATTGAAACGA AGCTTTTTAT TTTTCCAAAA GTGAGATGCT TTTCATGTTG
  GTTCCTTAAA CACCTGCGTT ATTTTAAGCC TGAAAGGTCA CATTCAGATA CACTTTGGGT
  TCAGATTTAT TCACACTTGA TTTTTATTCA ACAGTTAGAA AAGCCTACAC ATCATTTGAA
  R
  TTGCACAGGG TGCTATTCAG GTCTTGGCTC AGTTTTCAAA TCCACTGCTT CATATTCCTT
  ATTCAATACC CAAAGAATAC TTACTATGTG CTAGGCTGTG CTCTATAGTT TGGGCAGAGA
  GTGCTAAGCA CGATAGGGAA AATGCCCTCT CCTTGAGATG CATACATTCT ATTGGCAAGC
  ACTTATTTGT GAGTGCACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61092739	NES16592345	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		G	A	A	G		A
ss320992354	CHEV_3_141125080	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51146053					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092739	NES16592345	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141167877 () rs orientation: forward

Symbol	Name	Function Class
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	309 bp proximal