rs51145876 SNP Detail

Summary

• ID
  rs51145876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17765481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATATGGTT GATTGTAATA GCTGGTATGG TCTGGCTCAT
  CTGGTTCCGT CCTGAACTGG CAGATGGGCG GCCTACTACC TAATGTGCTG CAGTAGGTTT
  Y
  CAGTTGGTTT GGGTCATTGT GCTTAGTATG GGGAGATGTT GATGGTGGTT ATCTTGAGTA
  AAGGAACAGG GGAAAGCAGT CAGGACATGG AAGAACACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133022277	ENSMUSSNP4690802	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321756240	CHEV_6_17715482	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51145876					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17765481 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr626856	regulatory region 626856			517 bp distal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant