rs51145099 SNP Detail

Summary

• ID
  rs51145099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:67511266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCACACAG CCTATCTTTT
  TAGGTGTGCC TTTCCCATAT TTTATTAAAC TCGAGTTGTT GTTTTAAAAA ACAGCAGCAT
  TATCAAAGAC ACATCTGTAC AAACATTTTA CAAAAGAGAA CTCTCTAGGA TCAGCTACAT
  CAAGGACAAG CAGAAAAATA GATGCAGTCC AACAAAGACA TTGAAAATGA CTTCAGACGT
  Y
  GGAAATGCCT TTTCTTATAC AAACGATGGC AGATGAACAC TGCGCAGGAT CAATTAGTGA
  GTGAACTGCT CTTCCTTTCC TGAAGGTTGG GAGGCAGGGA GCGAATGGGT CACCAACAAC
  CCGGATAGCC AAATCGCCGC TTTCCCATTT CAAACCGTTT AAGTCTTTGG GTAGATTCAA
  GTCGCTGGGA AACAAGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60894267	NES15959591	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	C	T	C		C
ss321812327	CHEV_6_67484276	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51145099					SNP	T	T	T	T	T	T	C	T	T	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894267	NES15959591	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67511266 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17511	CpG island 17511	874 bp distal
Cpgi17512	CpG island 17512	368 bp proximal
Gm42889	predicted gene 42889	within coordinates
Gm67034	predicted gene, 67034	976 bp upstream
Rr368087	regulatory region 368087	909 bp downstream
Rr631666	regulatory region 631666	987 bp distal
Rr631667	regulatory region 631667	486 bp distal
Rr631668	regulatory region 631668	509 bp proximal
Rr631669	regulatory region 631669	952 bp proximal
Rr631670	regulatory region 631670	1503 bp proximal
Rr631671	regulatory region 631671	1504 bp proximal
Rr631672	regulatory region 631672	1676 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	mRNA-UTR
Tssr1867	transcription start site region 1867	1741 bp upstream
Tssr1868	transcription start site region 1868	1705 bp upstream
Tssr1869	transcription start site region 1869	944 bp upstream
Tssr1870	transcription start site region 1870	813 bp downstream
Tssr1871	transcription start site region 1871	464 bp downstream
Tssr1872	transcription start site region 1872	490 bp downstream
Tssr61254	transcription start site region 61254	619 bp upstream
Tssr61255	transcription start site region 61255	448 bp downstream
Tssr61256	transcription start site region 61256	912 bp downstream
Tssr61257	transcription start site region 61257	1403 bp downstream
Tssr61258	transcription start site region 61258	1501 bp downstream
Tssr61259	transcription start site region 61259	1546 bp downstream