rs51141212 SNP Detail

Summary

• ID
  rs51141212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19947050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGGCAGT GGGGATGGGA
  AGGACATAAT ATACAGGCAC AAGCTACCGA GCCTTTTGTT GGGCCCTATT TGGCCTTGGT
  TTGGGCTCAA TTTTTGAGAC CCGTCATTCT CCTCCACTTG AGAATGACTC AGCACGACCT
  ACCAACCTGA TTGAGACTGC CTCTGCCTAG CTACTGCTGA TGTAGGCCCC GTGAGATAAC
  Y
  CCACACCCCT CGTCATTTCA CTCCATCACA TATGTCATCT CACCCCATAT CCCTACCCCC
  ACCTCCTTGC CTTCTCTATA TAAGCAAGTA TCTAGTTTAA TAAAGTGAGT TTCTGCTTTG
  ACAACACTCC TGGCCCAGGT GTGTTTGTTT GGGGCCATCA ACACTCACCA TCCCACTCAG
  CCTCAGAGAG GCTGAAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134671180	ENSMUSSNP5409049	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51141212					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19947050 () rs orientation: forward

Symbol	Name	Function Class
Gm64742	predicted gene, 64742	1970 bp upstream
Rr574033	regulatory region 574033	1480 bp proximal
Rr574034	regulatory region 574034	1911 bp proximal
Rr574035	regulatory region 574035	1981 bp proximal
Tssr28531	transcription start site region 28531	1969 bp upstream