rs51130373 SNP Detail

Summary

• ID
  rs51130373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAGGTGG GTGGCAATTT
  TTAGGAGTAT CTCCTTCTAT GGATTTCAGG AAATAAACTC TGGTCCTAGT GCTTGAACAG
  TAAACAGCTC TGTCATTCTG TTGGGCCCCA GGCCACTCTT CTAATCTGTC TCTGTCTGCC
  TAATTTAGGT GACCACAACC AATACCTGCC CCAGCCCCCC ATTCCAGCCT TCCATGCCAC
  Y
  TTTCTCAGCC TCTTCCATAA GCCTCTCATC TCAGGTTCTA GTACCATCCT GCCCTCTCAG
  CCTCCCATCC CAGTGCCATG CTAGCCTCCT AGCCCAGCCT CCAATCCTCC TTTCTCCTCT
  CAGCTTTCTA GCTCAGGTGC GGGATGTTTG AATGAGCATC CTCCCTAGCC TCCTCTGAGA
  GGTCCCGCAG CCATTCCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147115273	ENSMUSSNP2512531	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320438742	CHEV_2_102389766	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51130373					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379954 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	403 bp upstream
Rr561703	regulatory region 561703	22 bp proximal
Rr561704	regulatory region 561704	1294 bp proximal
Tssr19094	transcription start site region 19094	436 bp upstream
Tssr19095	transcription start site region 19095	490 bp upstream
Tssr19096	transcription start site region 19096	508 bp upstream
Tssr19097	transcription start site region 19097	529 bp upstream