rs51128461 SNP Detail

Summary

• ID
  rs51128461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:67511363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAACATT TTACAAAAGA
  GAACTCTCTA GGATCAGCTA CATCAAGGAC AAGCAGAAAA ATAGATGCAG TCCAACAAAG
  ACATTGAAAA TGACTTCAGA CGTTGGAAAT GCCTTTTCTT ATACAAACGA TGGCAGATGA
  ACACTGCGCA GGATCAATTA GTGAGTGAAC TGCTCTTCCT TTCCTGAAGG TTGGGAGGCA
  R
  GGAGCGAATG GGTCACCAAC AACCCGGATA GCCAAATCGC CGCTTTCCCA TTTCAAACCG
  TTTAAGTCTT TGGGTAGATT CAAGTCGCTG GGAAACAAGT GGGCTGCCTG GCACTAGCTT
  CTTAACCAAG CTATCTAGCC TTTGCTTAAC TCTCCCGGTC AGGTTTCCAG TGACTAGACA
  AGGAATTTCA GAAATGCGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60894266	NES15959594	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51128461					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894266	NES15959594	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67511363 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17511	CpG island 17511	971 bp distal
Cpgi17512	CpG island 17512	271 bp proximal
Gm42889	predicted gene 42889	within coordinates
Gm67034	predicted gene, 67034	1073 bp upstream
Rr368087	regulatory region 368087	1006 bp downstream
Rr631666	regulatory region 631666	1084 bp distal
Rr631667	regulatory region 631667	583 bp distal
Rr631668	regulatory region 631668	412 bp proximal
Rr631669	regulatory region 631669	855 bp proximal
Rr631670	regulatory region 631670	1406 bp proximal
Rr631671	regulatory region 631671	1407 bp proximal
Rr631672	regulatory region 631672	1579 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	mRNA-UTR
Tssr1867	transcription start site region 1867	1838 bp upstream
Tssr1868	transcription start site region 1868	1802 bp upstream
Tssr1869	transcription start site region 1869	1041 bp upstream
Tssr1870	transcription start site region 1870	910 bp downstream
Tssr1871	transcription start site region 1871	561 bp downstream
Tssr1872	transcription start site region 1872	393 bp downstream
Tssr61254	transcription start site region 61254	716 bp upstream
Tssr61255	transcription start site region 61255	351 bp downstream
Tssr61256	transcription start site region 61256	815 bp downstream
Tssr61257	transcription start site region 61257	1306 bp downstream
Tssr61258	transcription start site region 61258	1404 bp downstream
Tssr61259	transcription start site region 61259	1449 bp downstream