rs51127501 SNP Detail

Summary

• ID
  rs51127501
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:66988896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGGGTTG CCTGGGAGCC
  ATCATTTCTA GTTCCAGATG CCTCACCTTT AAAGCAACAG TAAAAACTTC ACGCAGGGTT
  GTAATAAGGC TTCCTGAAAG ACTGTATGAA AGCAACAAGC AAGCTCCTGG TTTTCATGAG
  GATGCCACAT GGTATTTACC CTGGAAGCTC TGCTTGGATA AAGCAAGCTG ATGCATAGAC
  S
  GACAGCCTGG CGCTCCTGCC CAGGAGAGAA TAGAAACATT TGGGGGTGTT TTCTACCACT
  GTGGTCCTGC TCTGCCCCAG GACATTAGGT GAGGCTATAT GAAGTATCTG CAAGGAGGAA
  GGTCCTCTAT AGCCAGTCCC AGCCCCAGAA AGGCCTCCCT CCCTCCAAGC ACTGAAAGAG
  ACACAGTCTC TATCTAGATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60892257	NES15964061	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	C	C	G	C	G
ss133265562	ENSMUSSNP3843815	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51127501					SNP	G	G	G	G	G	G	C	G	G	C	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60892257	NES15964061	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:66988896 () rs orientation: forward

Symbol	Name	Function Class
Gm15644	predicted gene 15644	573 bp upstream
Gng12	guanine nucleotide binding protein (G protein), gamma 12	Intron
Rr379521	regulatory region 379521	1957 bp downstream
Rr631574	regulatory region 631574	1127 bp proximal