rs51126252 SNP Detail

Summary

• ID
  rs51126252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77002969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCTCCACT GTCTTCTAGT CCAGGGCAGG CTCTCTAAAC
  CGTGCACGTT GCCATGGTGC ACCCCCACGG GTATCTCCTC CAAGAGCTGC CTGCAGGTGT
  R
  CATGTGTTAT GAAGCCAGCC ACACCCAGGG GTGACCCCTG TCCCCACATC CACCCCCCCC
  ACACACAATT GGAATACCCA GAGACAAAAA GGTACCTTCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52373585	NES15269443	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51126252					SNP	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373585	NES15269443	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77002969 () rs orientation: forward

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	618 bp upstream
Cpgi1754	CpG island 1754	427 bp distal
Gm67721	predicted gene, 67721	within coordinates
Rr384956	regulatory region 384956	238 bp upstream
Rr434420	regulatory region 434420	485 bp distal
Rr434421	regulatory region 434421	279 bp distal
Tssr94211	transcription start site region 94211	489 bp downstream
Tssr98227	transcription start site region 98227	611 bp upstream
Tssr98228	transcription start site region 98228	579 bp upstream