rs51124003 SNP Detail

Summary

• ID
  rs51124003
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139363319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTGACA TCACTGCATG
  GCACTGCCAT CCACAGAGGT GTCAGGCAGC CTGCACAGCC AGCCTGGGAC ACATGGGGCT
  CACACACTGC AGGTCGGAAC TTGTGCCAGC CTCTCTGCCT TCAGCTCAGC CAGGCCCCCC
  TGCAGCCCTC AGTGGGCGCT CTTAAACAAC CACAGAGTTG CTCCTGACCC AGGGACTGCC
  W
  GGGTCTCTGC CGGGTCCTCA CCCCATTGGG CCCCTCTACC CTTCTTCTGT CTTGTTTTTC
  AGTACTCTTA AGTTTCCTGC GAGGCTGTTT TGCCTTTGAT GGAGTGAGTT TGGGCTTAGC
  AGGAGTCTGT GGGGAAGCTC AGACTCCCTC TGGCTCTGCC CAGTGTCCCC TGCCTAGAGG
  GGACTCTGAC CATCTGGCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147676624	ENSMUSSNP5380374	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51124003					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139363319 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aldh4a1	aldehyde dehydrogenase 4 family, member A1			Intron
				Noncoding-Transcript-Variant
Gm21969	predicted gene 21969			Intron
Rr603268	regulatory region 603268			305 bp proximal
Rr603269	regulatory region 603269			558 bp proximal
Rr603270	regulatory region 603270			1906 bp proximal