rs51120983 SNP Detail

Summary

• ID
  rs51120983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99565026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGTGTAT CTTTAGATTG
  GTTCATGCTA CAATGATTTA AAAATAAAAC ACTGCTATTT GAGTTAACGT CTTGAGCTTC
  AGGGGAAAAA TGTTTAAGAA ATTTGGGGTT GGAGCTTGGA AATAATTGCC AATAATTTCT
  GAAATGGCAA GAACCTACCT CACAAAAACA AAAGAAAAGT CTCAAGTCAT CACTAAGGAA
  Y
  GGAGATTGCT GGCTATCAGT GGCGAATGGG GAGCCAGCAG GCATTTCTAC TTAGCTCCTG
  CTGAGTGGAA TTCCGGGCCT GAGAAATCAC TGTGCTAGCA AGGCCGTGGG TAGAAAGGAG
  AAACAACTTT AACGGTTTCC TCTTTTTCTA CTCGATATTT ATTGGTCAAC TGGAATCAAA
  TTGTTTACTA GCAGGTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52684855	NES15534646	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51120983					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52684855	NES15534646	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99565026 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Intron
Tssr4149	transcription start site region 4149	1074 bp upstream
Tssr123695	transcription start site region 123695	1180 bp upstream
Tssr123696	transcription start site region 123696	1373 bp downstream
Tssr123697	transcription start site region 123697	1563 bp downstream
Tssr123698	transcription start site region 123698	1694 bp downstream
Tssr123699	transcription start site region 123699	1785 bp downstream
Tssr123700	transcription start site region 123700	1810 bp downstream
Tssr123701	transcription start site region 123701	1868 bp downstream
Tssr123702	transcription start site region 123702	1888 bp downstream
Tssr123703	transcription start site region 123703	1940 bp downstream
Tssr123704	transcription start site region 123704	1991 bp downstream