rs51119340 SNP Detail

Summary

• ID
  rs51119340
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:106203956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGGGCT TCCTGCGGAC
  ATATCAGGGC AAGGTTCAAA ATCAGGCTTA GCGTCTTCCT GTAGCCTATC TCACGTGTCT
  GGGGCATCAG GTTCATGAGG CAGTCAGTAG AGGTATGAGA AGGTAAAGTC TGTGAGAGGC
  CTCATACTAA GCCACTGGTG TACACCTCTT CCTGATCTAA CCTCTGTCCA GTTGTCTTTC
  M
  TTAAGGAGAA TTTTGGAACC TTTCCATTGC TTTTATGTTC ACTGGAATGG CCTCACATGC
  AGGACAGCCT TTTGACCTGG TTGGGTACTT TTAACTCTTT CCTCTACACT TTCCTACACC
  CACTCCAAAT CCTCCAGGTC TGCCCACCAT CCCCAGGGTG ATAAAGGTCG AATCCTTAGC
  CTGTCACCCG AGGCCCACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss132766228	ENSMUSSNP5632679	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323838831	CHEV_11_106174444	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51119340					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106203956 () rs orientation: forward

Symbol	Name	Function Class
Cd79b	CD79B antigen	Intron
Rr386632	regulatory region 386632	within coordinates
Rr458129	regulatory region 458129	1389 bp proximal
Rr458130	regulatory region 458130	1998 bp proximal
Tssr111335	transcription start site region 111335	577 bp downstream
Tssr111336	transcription start site region 111336	1364 bp downstream