rs51116410 SNP Detail

Summary

• ID
  rs51116410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132484519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGGGCCA GGAATATCAG
  CCACCCGAGC AGCGTCATCC TCTGGATCCC CCCACGGCGG GCGGCCGAAG CTCCTCCAAG
  TCCGTCTGCG CCGCGGGTTC CCACCTTGTG GCCAGCCACG TGTCTGGGCA GAACTACTCG
  TTTGGCTGCT TCCAGTGTTC CAAGTTATCC TTGGCGGATG GCTGCTCTTG CTTTTCCCTC
  Y
  CTTGCCCAGC AGGGCGTGCG CTTGATTGGA GGAGGGACGC ACCAGTGAGC GCTGGAATAG
  CTTGTAGGTC TCTGTGGAAA CCGCATCTGT GTTGCAAGGT GCTGTGTTGG AGTTCCCCGA
  CTTTTCGAAA GAAATTCATA AGTACTTAGG AGCAAAATGA TAGGATCTTC GAGGTACGCT
  TTAAAGTTTT CTAGTCGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147477894	ENSMUSSNP6532409	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321336222	CHEV_4_132313123	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51116410					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132484519 () rs orientation: forward

Symbol	Name	Function Class
Gm70165	predicted gene, 70165	994 bp upstream
Rr601063	regulatory region 601063	within coordinates
Rr601064	regulatory region 601064	34 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	mRNA-UTR
Tssr43702	transcription start site region 43702	101 bp upstream
Tssr43703	transcription start site region 43703	56 bp upstream
Tssr43704	transcription start site region 43704	21 bp upstream
Tssr43705	transcription start site region 43705	21 bp downstream
Tssr43706	transcription start site region 43706	40 bp downstream