rs51112138 SNP Detail

Summary

• ID
  rs51112138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122212868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTCTTATC CATCTGATCC GAAGGTGTTC CTTACATAGT
  TTCTATACAT TTCCTTTATC GGCTGCATGA ATTGCGTAGA GGAGCTCTTA ATGACAATTA
  Y
  GTTAACAAGC GGGTTTCCTT TGGCGTTAGT GCTTCGTGTA TTTAATTAAG GAATCTTTAC
  AGCCCTTTTT TTTTATTGTT TGTTGTTTGG TTTTGCTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135741311	ENSMUSSNP5920274	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320911473	CHEV_3_122122137	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51112138					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122212868 () rs orientation: forward

Symbol	Name	Function Class
Bcar3	breast cancer anti-estrogen resistance 3	538 bp upstream
Cpgi13768	CpG island 13768	334 bp proximal
Rr397985	regulatory region 397985	362 bp upstream
Rr584325	regulatory region 584325	16 bp distal
Rr584326	regulatory region 584326	122 bp proximal
Rr584327	regulatory region 584327	570 bp proximal
Tssr31494	transcription start site region 31494	520 bp upstream
Tssr31495	transcription start site region 31495	553 bp upstream
Tssr31496	transcription start site region 31496	574 bp upstream
Tssr31497	transcription start site region 31497	647 bp upstream
Tssr31498	transcription start site region 31498	766 bp upstream