rs51104646 SNP Detail

Summary

• ID
  rs51104646
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:150524965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAAAACC AAGTCATAAG
  CTCTGAGTTT TCTTGCTTTG GGCCCTATAT ATTTATTTTG TATACTTTTG CATACAAACA
  AGTAAAGAAA CATCATGGTT CTTGGGGTAA ATAAAAAATG TACATTTCAT CAGGACTTGA
  AAAAAATCGA TTTTCATTTC ACGATAACCT CAAATGTGAA AGAAAAGAAC ATCATTTTTA
  M
  AAATACAAAG TCTCATTTGG TAAATGTTCT TCTCACAGTT ACATCTATGT CACCATGGAG
  AAATTTTGCA AAAGGACATA ATTCAGAGAC CCTGGCAAGC ATGATTGTGA CACATGGTTC
  TTTGTACCAT GCAATACATT ACAGAGCCTT CCCTTTTCTT GTAGTTTTGT GTGGTGAATT
  TTAAGGCCAA GTATGGGATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61099714	NES16604077	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51104646					SNP	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61099714	NES16604077	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:150524965 () rs orientation: forward

Symbol	Name	Function Class
Rr587375	regulatory region 587375	48 bp proximal