rs51102778 SNP Detail

Summary

• ID
  rs51102778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55682854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGACAGG ATGCTGATGG
  TCTTTGCTTT TGTTTTTGTC TCATCTCCCT TGTCAATCAA CTAGAAAAAG GTAACACTAA
  CAAGGGAGAT TATTCCTCTG AAAATGGCCA AATGATTAAT CCTATGAAAT ATCCTAGACA
  TAAGAAGAAA GGTATTTTGG TCATGAGCCT AGCCTTTAAT GGCTGAGCCA TCTCTCCAGC
  Y
  CAAAATACCC ATGGAAGGAG TTACAGAGAC AAAGTTTGGA GCAGAGACTG AAGGAATGAC
  CATCCAAAGA CTACCCCACC TGGGGATCCA TCCTATATAC AACCACCAAA CCCAGACACT
  GTTGTGGATG CCAACAAGAG CTTGCTGAAA GGAGACTGAA AATGCTGTCT CCTGAGAGGC
  TCTGCCAGTG CCTGACAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133214651	ENSMUSSNP2540289	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51102778					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55682854 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	1072 bp distal
Rr631016	regulatory region 631016	1475 bp distal