rs51102524 SNP Detail

Summary

• ID
  rs51102524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:59892568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATACATG TAGTTATGTA
  TAATCTATGA ATAATACTAC ATTCATGGGA GGAGGGCAAA ACTGGGGTCA ATGCAGAACA
  GAGCAGCAAA AGGCAATGCT TCCAACACTT ACCATGAGTG GGTTACATGG TATCTTATAT
  ACAACTCTAA GCAATGACCT TGGTGTTTAA GGAATGACAC TTGAAGTCCC AGAGGCAGGG
  Y
  GGTGTGGCAA CACTGTCAAG CTGAGCTTAG AACTGACAAG AGACTGCCTG TAAAATACTG
  TTGTCGTTAA GAAATAGTTT AATTATGTAA CAGAAGTGTG TGATATTAAA TCAGTCTTGA
  TTCTGTGATT TTAAGTCTTG TTGGTAGAAG TGTTTTTGAG TATGTATTTT TAGGCTAAAA
  TCAGAAATAA AATGTTCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63313551	NES17495241	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51102524					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63313551	NES17495241	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:59892568 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rab11fip2	RAB11 family interacting protein 2 (class I)			Intron
				mRNA-UTR
Rr550672	regulatory region 550672			1276 bp proximal