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rs51102524 SNP Detail
Summary
  • ID
    rs51102524
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr19:59892568 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCAATACATG TAGTTATGTA
    TAATCTATGA ATAATACTAC ATTCATGGGA GGAGGGCAAA ACTGGGGTCA ATGCAGAACA
    GAGCAGCAAA AGGCAATGCT TCCAACACTT ACCATGAGTG GGTTACATGG TATCTTATAT
    ACAACTCTAA GCAATGACCT TGGTGTTTAA GGAATGACAC TTGAAGTCCC AGAGGCAGGG
    Y
    GGTGTGGCAA CACTGTCAAG CTGAGCTTAG AACTGACAAG AGACTGCCTG TAAAATACTG
    TTGTCGTTAA GAAATAGTTT AATTATGTAA CAGAAGTGTG TGATATTAAA TCAGTCTTGA
    TTCTGTGATT TTAAGTCTTG TTGGTAGAAG TGTTTTTGAG TATGTATTTT TAGGCTAAAA
    TCAGAAATAA AATGTTCTTA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss63313551 NES17495241 PERLEGEN MM_PANEL2 f SNP C C C C T C C C C C C C C C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs51102524 SNP C C C C T C C C C C C C C C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss63313551 NES17495241 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:59892568 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rab11fip2 RAB11 family interacting protein 2 (class I) Intron
mRNA-UTR
Rr550672 regulatory region 550672 1276 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory