rs51100456 SNP Detail

Summary

• ID
  rs51100456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58789252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGTTAAAGA AAATTATTAG GTGACTTTCA CCTTTTTTTC
  TTTTTAATGT TTAATATGGC TACTAGGGCT TACATCGTAA CTCTATGGGC CAATAGTGAT
  Y
  TAAGCAGCAG GGGCTATGAC TCAGTGGCAT AGCACTTGAC CATCATGTGC AAGGTCCCTG
  GCATTTAAAC TCCAGTACCT CCCTCCCCCA AAAAACCTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135210101	ENSMUSSNP2310326	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320783874	CHEV_3_58685753	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51100456					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58789252 () rs orientation: forward

Symbol	Name	Function Class
Clrn1	clarin 1	Intron
Rr375038	regulatory region 375038	555 bp upstream
Rr577289	regulatory region 577289	1038 bp proximal
Rr577290	regulatory region 577290	1625 bp proximal