rs51094017 SNP Detail

Summary

• ID
  rs51094017
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTATTTCT CTCTGCTTCC
  TAGTGTGTGT GGCTTGTGGG AGCCCTGGGC TCATTTCCTG GTCTCTCTGC CGTAGTGTGC
  ATTTCTAGAA ATGGTTTAAA AATTCTCAGC GACTGGTAAG AGAGAGAAAT CGAGTTTCTT
  TTTCTTTTTT CTTGCTAGCC CATCATATAA GGGTAAACTG GGGGGCATGA AAGTAAAACA
  M
  CGAATGGTTT TGCTTTCCTT TAATCCGTGC ATTGAGGAAA AGGTTATGGT GTAGCTGGTA
  TATCAGACTG TCGATGGAAA TTATTTCCTA TTTAACAAAT AGGCCCAGAG ACGAGTAACT
  CGTTTGGGAA AGCCTCTTTT AAAATGCCTT CAGGGGCTGG AGAGATGGCT CAGCGGTTAA
  CAGTACTGAC TGTTCTTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135874523	ENSMUSSNP470878	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51094017					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691291 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1119 bp distal
Fam241a	family with sequence similarity 241, member A	1319 bp upstream
Rr398009	regulatory region 398009	1069 bp downstream
Rr584896	regulatory region 584896	1623 bp distal
Rr584897	regulatory region 584897	828 bp distal
Tssr35608	transcription start site region 35608	1409 bp upstream
Tssr35609	transcription start site region 35609	1372 bp upstream
Tssr35610	transcription start site region 35610	1305 bp upstream