rs51093908 SNP Detail

Summary

• ID
  rs51093908
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27255956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTACAGAA AGGGCACAGA
  GCTAGCCTGG GCAATGTTGT GAGACCCTGT CTCAAAACAA AAAGTGGCTT GCATTTTCCC
  ACAAGAGAGA AGTAATTAAT GTGGTAGCCA TGTAGGGTCA CATGTGAACT TGCACCTCTT
  TTGCAAAGAC GGAGACATGT ACCTGCTCTG GAAATTGCTT TGGTCTTCTG TGTGGCTCAC
  W
  GTCAGCTCCC ACCAATGTTT GGTTGAACAG CCCTGTGTGT CCACGGCACT TCTGGGCCAC
  CACAAAATCT ATAGCTATTT GCTAACCTCA AGGACAAGGG TCAGATGAGA GACTGTTGAC
  ATTGTCTGTG ACCCTTAGCA CAGTTTTGGG CATCACTCAG TATAGTACCA AGTTATAAAT
  AGCCTTCCTC CTAGTGCTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134702745	ENSMUSSNP2904535	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51093908					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27255956 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574365	regulatory region 574365			within coordinates