rs51092541 SNP Detail

Summary

• ID
  rs51092541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90493137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTATCTG GCTTCCCGTT
  CAGTTCACCT AGGCTTCTCA GCAGGGACTG TCCAGGAAAC CCCTTTTGTG TGAAGCAGGT
  GTGGGTGTGG GAAGGCTCTT TGGAGATGAA TCACCACTGC CTCCTCCTTG GTGAATCATG
  GCTGGGGCTT GGGAACAGCT AGCTGGTGGA CAGGAGGGAG AGCGAAGAAC TAAATTGCAA
  Y
  GATACATCTC AACCACCAGG GGGCAGAAGC CGGATAGGCA AAACCGAGCC AACCACTGCA
  GTAAAACTTG TGGCATTCAG AGTTTGGGAG TGGGTGGATG GAATGTGAGG CTGAATCTCT
  TTGTCAGCCT CTAATCTCCA TCCTTGCCCT CTGGGAACTT TGCTCCTTTT CTGGGTCCCT
  GTGGCAGGAA GTTTCCTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424331	NES15923772	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51092541					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424331	NES15923772	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90493137 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13467	CpG island 13467	1115 bp proximal
Rr854	regulatory region 854	within coordinates
Rr367471	regulatory region 367471	within coordinates
Rr580405	regulatory region 580405	1391 bp distal
Rr580406	regulatory region 580406	9 bp proximal
Rr580407	regulatory region 580407	364 bp proximal
Rr580408	regulatory region 580408	632 bp proximal
Rr580409	regulatory region 580409	1133 bp proximal
Rr580410	regulatory region 580410	1369 bp proximal
S100a3	S100 calcium binding protein A3	Intron
Tssr945	transcription start site region 945	1445 bp upstream
Tssr30230	transcription start site region 30230	1425 bp upstream