rs51090403 SNP Detail

Summary

• ID
  rs51090403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146606418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCATTTT GGATAACTCA
  AAAAGAAAAC TTTTTTTCAG GCCTATCTAC TTCTACAAAT TTGTAATCCT AGCTACTTTG
  GAAGATGAGA CAAGAGAATT GAGAGTTCAA GGCCTGCCTG GGCAACTAAT GAGCCTTGTT
  TTAAAATACA AACTACAAAG CAGGCAGTGG GTGTATGCTC AGTGGTGGAA CATTTGCACA
  Y
  GGGAGGCTTT CTGGCCAAGC TCCGGGACCT CCACTCCCCC CCCCCCCAAA ACAAATGCCT
  TACACTTATC AGTGCCATCA GGTTACAGAT CACAATAGGC AGCAGAATCC TAGCAAGTGC
  AAGAGAACCA GAGGACATGC TGTGGACTCA GAGATTCAGG TGCTGCCTCA AAACAGTGGC
  TAGAAAGAAG TCAGGAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61097363	NES16605570	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51090403					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61097363	NES16605570	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146606418 () rs orientation: forward

Symbol	Name	Function Class
Rr587102	regulatory region 587102	352 bp distal
Tssr1089	transcription start site region 1089	1151 bp downstream
Tssr32371	transcription start site region 32371	1471 bp downstream
Ttll7	tubulin tyrosine ligase-like family, member 7	Intron