rs51089963 SNP Detail

Summary

• ID
  rs51089963
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36667705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC TCTGGGCCGC TGGGCCAGCG
  M
  TCTGCTTGGA GCTTCGCTGG AGCTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134784840	ENSMUSSNP3864170	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320703514	CHEV_3_36512478	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51089963					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36667705 () rs orientation: forward

Symbol	Name	Function Class
Bbs7	Bardet-Biedl syndrome 7	79 bp upstream
Cpgi13088	CpG island 13088	within coordinates
Rr575383	regulatory region 575383	282 bp distal
Rr575384	regulatory region 575384	within coordinates
Rr575385	regulatory region 575385	107 bp distal
Tssr28874	transcription start site region 28874	70 bp downstream
Tssr33039	transcription start site region 33039	189 bp upstream
Tssr33040	transcription start site region 33040	159 bp upstream
Tssr33041	transcription start site region 33041	127 bp upstream
Tssr33042	transcription start site region 33042	85 bp upstream
Tssr33043	transcription start site region 33043	56 bp upstream