rs51082300 SNP Detail

Summary

• ID
  rs51082300
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:67395175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA TTAAAATACT CTACAAGGAA
  G
  GATTATTAGT GTTTGAGGGA AAGAT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146721150	ENSMUSSNP1062332	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320326796	CHEV_2_67402888	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs51082300					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:67395175 () rs orientation: forward

Symbol	Name	Function Class
B3galt1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	1040 bp upstream
Cpgi11705	CpG island 11705	290 bp proximal
Rr558220	regulatory region 558220	36 bp proximal
Rr558221	regulatory region 558221	1052 bp proximal
Tssr18010	transcription start site region 18010	849 bp upstream